ClusterSnnGraph.hpp File Reference

Identify clusters of cells from a shared nearest-neighbor graph. More...

#include "../utils/macros.hpp"
#include "BuildSnnGraph.hpp"
#include <vector>
#include <algorithm>
#include "igraph.h"
#include "igraph_utils.hpp"

Include dependency graph for ClusterSnnGraph.hpp:

Go to the source code of this file.

Classes
class	scran::ClusterSnnGraphMultiLevel
	Multi-level clustering on a shared nearest-neighbor graph. More...
struct	scran::ClusterSnnGraphMultiLevel::Defaults
	Default parameter settings. More...
struct	scran::ClusterSnnGraphMultiLevel::Results
	Result of the igraph multi-level community detection algorithm. More...
class	scran::ClusterSnnGraphWalktrap
	Walktrap clustering on a shared nearest-neighbor graph. More...
struct	scran::ClusterSnnGraphWalktrap::Defaults
	Default parameter settings. More...
struct	scran::ClusterSnnGraphWalktrap::Results
	Result of the igraph Walktrap community detection algorithm. More...
class	scran::ClusterSnnGraphLeiden
	Leiden clustering on a shared nearest-neighbor graph. More...
struct	scran::ClusterSnnGraphLeiden::Defaults
	Default parameter settings. More...
struct	scran::ClusterSnnGraphLeiden::Results
	Result of the igraph leiden community detection algorithm. More...

Namespaces
namespace	scran
	Functions for single-cell RNA-seq analyses.

Detailed Description

Identify clusters of cells from a shared nearest-neighbor graph.