ModelGeneVariances.hpp File Reference

Model the per-gene variance from log-count data. More...

#include "../utils/macros.hpp"
#include "tatami/tatami.hpp"
#include "../utils/vector_to_pointers.hpp"
#include "../utils/blocking.hpp"
#include "../utils/average_vectors.hpp"
#include "FitVarianceTrend.hpp"
#include "blocked_variances.hpp"
#include <algorithm>
#include <vector>
#include <limits>

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Classes
class	scran::ModelGeneVariances
	Compute and model the per-gene variances in log-expression data. More...
struct	scran::ModelGeneVariances::Defaults
	Default parameters for variance modelling. More...
struct	scran::ModelGeneVariances::Results
	Results of variance modelling without blocks. More...
struct	scran::ModelGeneVariances::BlockResults
	Results of variance modelling with blocks. More...

Namespaces
namespace	scran
	Functions for single-cell RNA-seq analyses.

Detailed Description

Model the per-gene variance from log-count data.