scran
C++ library for basic single-cell RNA-seq analyses
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This is the complete list of members for scran::LogNormCounts, including all inherited members.
run(std::shared_ptr< MAT > mat, V size_factors) const | scran::LogNormCounts | inline |
run(std::shared_ptr< MAT > mat) const | scran::LogNormCounts | inline |
run_blocked(std::shared_ptr< MAT > mat, V size_factors, const B *block) const | scran::LogNormCounts | inline |
run_blocked(std::shared_ptr< MAT > mat, const B *block) const | scran::LogNormCounts | inline |
set_block_mode(CenterSizeFactors::BlockMode b=CenterSizeFactors::Defaults::block_mode) | scran::LogNormCounts | inline |
set_center(bool c=Defaults::center) | scran::LogNormCounts | inline |
set_choose_pseudo_count(bool c=Defaults::choose_pseudo_count) | scran::LogNormCounts | inline |
set_handle_non_finite(bool n=Defaults::handle_non_finite) | scran::LogNormCounts | inline |
set_handle_zeros(bool z=Defaults::handle_zeros) | scran::LogNormCounts | inline |
set_max_bias(double m=ChoosePseudoCount::Defaults::max_bias) | scran::LogNormCounts | inline |
set_min_value(double m=ChoosePseudoCount::Defaults::min_value) | scran::LogNormCounts | inline |
set_num_threads(int n=Defaults::num_threads) | scran::LogNormCounts | inline |
set_pseudo_count(double p=Defaults::pseudo_count) | scran::LogNormCounts | inline |
set_quantile(double q=ChoosePseudoCount::Defaults::quantile) | scran::LogNormCounts | inline |
set_sparse_addition(bool a=Defaults::sparse_addition) | scran::LogNormCounts | inline |