scran
C++ library for basic single-cell RNA-seq analyses
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scran::LogNormCounts Member List

This is the complete list of members for scran::LogNormCounts, including all inherited members.

run(std::shared_ptr< MAT > mat, V size_factors) constscran::LogNormCountsinline
run(std::shared_ptr< MAT > mat) constscran::LogNormCountsinline
run_blocked(std::shared_ptr< MAT > mat, V size_factors, const B *block) constscran::LogNormCountsinline
run_blocked(std::shared_ptr< MAT > mat, const B *block) constscran::LogNormCountsinline
set_block_mode(CenterSizeFactors::BlockMode b=CenterSizeFactors::Defaults::block_mode)scran::LogNormCountsinline
set_center(bool c=Defaults::center)scran::LogNormCountsinline
set_choose_pseudo_count(bool c=Defaults::choose_pseudo_count)scran::LogNormCountsinline
set_handle_non_finite(bool n=Defaults::handle_non_finite)scran::LogNormCountsinline
set_handle_zeros(bool z=Defaults::handle_zeros)scran::LogNormCountsinline
set_max_bias(double m=ChoosePseudoCount::Defaults::max_bias)scran::LogNormCountsinline
set_min_value(double m=ChoosePseudoCount::Defaults::min_value)scran::LogNormCountsinline
set_num_threads(int n=Defaults::num_threads)scran::LogNormCountsinline
set_pseudo_count(double p=Defaults::pseudo_count)scran::LogNormCountsinline
set_quantile(double q=ChoosePseudoCount::Defaults::quantile)scran::LogNormCountsinline
set_sparse_addition(bool a=Defaults::sparse_addition)scran::LogNormCountsinline