scran
C++ library for basic single-cell RNA-seq analyses
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This is the complete list of members for scran::ModelGeneVariances, including all inherited members.
run(const tatami::Matrix< Value_, Index_ > *mat, Stat_ *means, Stat_ *variances, Stat_ *fitted, Stat_ *residuals) const | scran::ModelGeneVariances | inline |
run(const tatami::Matrix< Value_, Index_ > *mat) const | scran::ModelGeneVariances | inline |
run_blocked(const tatami::Matrix< Value_, Index_ > *mat, const Block_ *block, std::vector< Stat_ * > means, std::vector< Stat_ * > variances, std::vector< Stat_ * > fitted, std::vector< Stat_ * > residuals, Stat_ *ave_means, Stat_ *ave_variances, Stat_ *ave_fitted, Stat_ *ave_residuals) const | scran::ModelGeneVariances | inline |
run_blocked(const tatami::Matrix< Value_, Index_ > *mat, const Block_ *block, std::vector< Stat_ * > means, std::vector< Stat_ * > variances, std::vector< Stat_ * > fitted, std::vector< Stat_ * > residuals) const | scran::ModelGeneVariances | inline |
run_blocked(const tatami::Matrix< Value_, Index_ > *mat, const Block_ *block) const | scran::ModelGeneVariances | inline |
set_block_weight_policy(WeightPolicy w=Defaults::block_weight_policy) | scran::ModelGeneVariances | inline |
set_compute_average(bool a=Defaults::compute_average) | scran::ModelGeneVariances | inline |
set_fixed_width(double f=FitVarianceTrend::Defaults::fixed_width) | scran::ModelGeneVariances | inline |
set_minimum_mean(double m=FitVarianceTrend::Defaults::minimum_mean) | scran::ModelGeneVariances | inline |
set_minimum_window_count(int c=FitVarianceTrend::Defaults::minimum_window_count) | scran::ModelGeneVariances | inline |
set_num_threads(int n=Defaults::num_threads) | scran::ModelGeneVariances | inline |
set_span(double s=FitVarianceTrend::Defaults::span) | scran::ModelGeneVariances | inline |
set_use_fixed_width(bool u=FitVarianceTrend::Defaults::use_fixed_width) | scran::ModelGeneVariances | inline |
set_variable_block_weight_parameters(VariableBlockWeightParameters v=Defaults::variable_block_weight_parameters) | scran::ModelGeneVariances | inline |