scran
C++ library for basic single-cell RNA-seq analyses
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This is the complete list of members for scran::PairwiseEffects, including all inherited members.
run(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group, std::vector< Stat_ * > means, std::vector< Stat_ * > detected, Stat_ *cohen, Stat_ *auc, Stat_ *lfc, Stat_ *delta_detected) const | scran::PairwiseEffects | inline |
run(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group) | scran::PairwiseEffects | inline |
run_blocked(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group, const Block_ *block, std::vector< Stat_ * > means, std::vector< Stat_ * > detected, Stat_ *cohen, Stat_ *auc, Stat_ *lfc, Stat_ *delta_detected) const | scran::PairwiseEffects | inline |
run_blocked(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group, const Block_ *block) | scran::PairwiseEffects | inline |
set_block_weight_policy(WeightPolicy w=Defaults::block_weight_policy) | scran::PairwiseEffects | inline |
set_compute_auc(bool c=Defaults::compute_auc) | scran::PairwiseEffects | inline |
set_compute_cohen(bool c=Defaults::compute_cohen) | scran::PairwiseEffects | inline |
set_compute_delta_detected(bool c=Defaults::compute_delta_detected) | scran::PairwiseEffects | inline |
set_compute_lfc(bool c=Defaults::compute_lfc) | scran::PairwiseEffects | inline |
set_num_threads(int n=Defaults::num_threads) | scran::PairwiseEffects | inline |
set_threshold(double t=Defaults::threshold) | scran::PairwiseEffects | inline |
set_variable_block_weight_parameters(VariableBlockWeightParameters v=Defaults::variable_block_weight_parameters) | scran::PairwiseEffects | inline |