scran
C++ library for basic single-cell RNA-seq analyses
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scran::PairwiseEffects Member List

This is the complete list of members for scran::PairwiseEffects, including all inherited members.

run(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group, std::vector< Stat_ * > means, std::vector< Stat_ * > detected, Stat_ *cohen, Stat_ *auc, Stat_ *lfc, Stat_ *delta_detected) constscran::PairwiseEffectsinline
run(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group)scran::PairwiseEffectsinline
run_blocked(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group, const Block_ *block, std::vector< Stat_ * > means, std::vector< Stat_ * > detected, Stat_ *cohen, Stat_ *auc, Stat_ *lfc, Stat_ *delta_detected) constscran::PairwiseEffectsinline
run_blocked(const tatami::Matrix< Data_, Index_ > *p, const Group_ *group, const Block_ *block)scran::PairwiseEffectsinline
set_block_weight_policy(WeightPolicy w=Defaults::block_weight_policy)scran::PairwiseEffectsinline
set_compute_auc(bool c=Defaults::compute_auc)scran::PairwiseEffectsinline
set_compute_cohen(bool c=Defaults::compute_cohen)scran::PairwiseEffectsinline
set_compute_delta_detected(bool c=Defaults::compute_delta_detected)scran::PairwiseEffectsinline
set_compute_lfc(bool c=Defaults::compute_lfc)scran::PairwiseEffectsinline
set_num_threads(int n=Defaults::num_threads)scran::PairwiseEffectsinline
set_threshold(double t=Defaults::threshold)scran::PairwiseEffectsinline
set_variable_block_weight_parameters(VariableBlockWeightParameters v=Defaults::variable_block_weight_parameters)scran::PairwiseEffectsinline