scran.hpp File Reference

Umbrella header for all libscran functionality. More...

#include "utils/macros.hpp"
#include "aggregation/AggregateAcrossCells.hpp"
#include "aggregation/DownsampleByNeighbors.hpp"
#include "feature_set_enrichment/HypergeometricTail.hpp"
#include "feature_set_enrichment/ScoreFeatureSet.hpp"
#include "clustering/BuildSnnGraph.hpp"
#include "differential_analysis/ScoreMarkers.hpp"
#include "feature_selection/ChooseHvgs.hpp"
#include "feature_selection/FitVarianceTrend.hpp"
#include "feature_selection/ModelGeneVariances.hpp"
#include "dimensionality_reduction/SimplePca.hpp"
#include "dimensionality_reduction/ResidualPca.hpp"
#include "dimensionality_reduction/MultiBatchPca.hpp"
#include "normalization/LogNormCounts.hpp"
#include "normalization/GroupedSizeFactors.hpp"
#include "normalization/MedianSizeFactors.hpp"
#include "normalization/CenterSizeFactors.hpp"
#include "normalization/ChoosePseudoCount.hpp"
#include "normalization/quick_grouped_size_factors.hpp"
#include "quality_control/FilterCells.hpp"
#include "quality_control/SuggestRnaQcFilters.hpp"
#include "quality_control/PerCellRnaQcMetrics.hpp"
#include "quality_control/SuggestAdtQcFilters.hpp"
#include "quality_control/PerCellAdtQcMetrics.hpp"
#include "quality_control/SuggestCrisprQcFilters.hpp"
#include "quality_control/PerCellCrisprQcMetrics.hpp"
#include "utils/average_vectors.hpp"
#include "utils/subset_vector.hpp"
#include "utils/vector_to_pointers.hpp"

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Namespaces
namespace	scran
	Functions for single-cell RNA-seq analyses.

Detailed Description

Umbrella header for all libscran functionality.