Compute size factors for groups of cells. More...
#include "../utils/macros.hpp"#include "MedianSizeFactors.hpp"#include "SanitizeSizeFactors.hpp"#include "CenterSizeFactors.hpp"#include "../aggregation/AggregateAcrossCells.hpp"#include "tatami/tatami.hpp"#include "../utils/blocking.hpp"#include <memory>#include <vector>#include <algorithm>
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Classes | |
| class | scran::GroupedSizeFactors |
| Compute grouped size factors to handle composition bias. More... | |
| struct | scran::GroupedSizeFactors::Defaults |
| Default parameter settings. More... | |
| struct | scran::GroupedSizeFactors::Results< Out > |
| Result of the size factor calculations. More... | |
Namespaces | |
| namespace | scran |
| Functions for single-cell RNA-seq analyses. | |
Detailed Description
Compute size factors for groups of cells.
