Compute a variety of per-cell quality control metrics from a count matrix. More...
#include "../utils/macros.hpp"#include <vector>#include <algorithm>#include <limits>#include <cstdint>#include "tatami/tatami.hpp"#include "../utils/vector_to_pointers.hpp"
Include dependency graph for PerCellQcMetrics.hpp:
This graph shows which files directly or indirectly include this file:
Go to the source code of this file.
Classes | |
| class | scran::PerCellQcMetrics |
| Compute a variety of per-cell quality control metrics from a count matrix. More... | |
| struct | scran::PerCellQcMetrics::Results |
| Result store for QC metric calculations. More... | |
| struct | scran::PerCellQcMetrics::Buffers< Float, Integer > |
| Buffers for direct storage of the calculated statistics. More... | |
| struct | scran::PerCellQcMetrics::Defaults |
| Default parameters. More... | |
Namespaces | |
| namespace | scran |
| Functions for single-cell RNA-seq analyses. | |
Detailed Description
Compute a variety of per-cell quality control metrics from a count matrix.
