scran
C++ library for basic single-cell RNA-seq analyses
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Classes | Namespaces
ResidualPca.hpp File Reference

Compute PCA after regressing out an uninteresting factor. More...

#include "../utils/macros.hpp"
#include "tatami/tatami.hpp"
#include "irlba/irlba.hpp"
#include "Eigen/Dense"
#include <vector>
#include <cmath>
#include "utils.hpp"
#include "convert.hpp"
#include "wrappers.hpp"
#include "blocking.hpp"
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Classes

class  scran::ResidualPca
 Compute PCA after regressing out an uninteresting factor. More...
 
struct  scran::ResidualPca::Defaults
 Default parameter settings. More...
 
struct  scran::ResidualPca::Results
 Container for the PCA results. More...
 

Namespaces

namespace  scran
 Functions for single-cell RNA-seq analyses.
 

Detailed Description

Compute PCA after regressing out an uninteresting factor.