scran
C++ library for basic single-cell RNA-seq analyses
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dimensionality_reduction Directory Reference
Directory dependency graph for dimensionality_reduction:
scran/dimensionality_reduction

Files

 MultiBatchPca.hpp
 Compute PCA after adjusting for differences between batch sizes.
 
 ResidualPca.hpp
 Compute PCA after regressing out an uninteresting factor.
 
 ScaleByNeighbors.hpp
 Scale multi-modal embeddings based on their relative variance.
 
 SimplePca.hpp
 Perform a simple PCA on a gene-by-cell matrix.