scran::ScoreMarkers::Results< Stat_ > Struct Template Reference

Results of the marker scoring. More...

#include <ScoreMarkers.hpp>

Public Attributes
std::vector< std::vector< std::vector< Stat_ > > >	cohen
std::vector< std::vector< std::vector< Stat_ > > >	auc
std::vector< std::vector< std::vector< Stat_ > > >	lfc
std::vector< std::vector< std::vector< Stat_ > > >	delta_detected
std::vector< std::vector< Stat_ > >	means
std::vector< std::vector< Stat_ > >	detected

Detailed Description

template<typename Stat_>
struct scran::ScoreMarkers::Results< Stat_ >

Results of the marker scoring.

Template Parameters

Stat_

Floating-point type to store the statistics.

Meaningful instances of this object should generally be constructed by calling the ScoreMarkers::run() methods. Empty instances can be default-constructed as placeholders.

Member Data Documentation

cohen

template<typename Stat_ >

std::vector<std::vector<std::vector<Stat_> > > scran::ScoreMarkers::Results< Stat_ >::cohen

Summary statistics for Cohen's d. Elements of the outer vector correspond to the different summary statistics (see differential_analysis::summary); elements of the middle vector correspond to the different groups; and elements of the inner vector correspond to individual genes.

auc

template<typename Stat_ >

std::vector<std::vector<std::vector<Stat_> > > scran::ScoreMarkers::Results< Stat_ >::auc

Summary statistics for the AUC. Elements of the outer vector correspond to the different summary statistics (see differential_analysis::summary); elements of the middle vector correspond to the different groups; and elements of the inner vector correspond to individual genes.

lfc

template<typename Stat_ >

std::vector<std::vector<std::vector<Stat_> > > scran::ScoreMarkers::Results< Stat_ >::lfc

Summary statistics for the log-fold change. Elements of the outer vector correspond to the different summary statistics (see differential_analysis::summary); elements of the middle vector correspond to the different groups; and elements of the inner vector correspond to individual genes.

delta_detected

template<typename Stat_ >

std::vector<std::vector<std::vector<Stat_> > > scran::ScoreMarkers::Results< Stat_ >::delta_detected

Summary statistics for the delta in the detected proportions. Elements of the outer vector correspond to the different summary statistics (see differential_analysis::summary); elements of the middle vector correspond to the different groups; and elements of the inner vector correspond to individual genes.

means

template<typename Stat_ >

std::vector<std::vector<Stat_> > scran::ScoreMarkers::Results< Stat_ >::means

Mean expression in each group. Elements of the outer vector corresponds to the different groups, and elements of the inner vector correspond to individual genes.

detected

template<typename Stat_ >

std::vector<std::vector<Stat_> > scran::ScoreMarkers::Results< Stat_ >::detected

Proportion of detected expression in each group. Elements of the outer vector corresponds to the different groups, and elements of the inner vector correspond to individual genes.

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The documentation for this struct was generated from the following file:

• scran/differential_analysis/ScoreMarkers.hpp